Commonly used
Hs
Human
Homo sapiens
GRCh38
Mm
Mouse
Mus musculus
GRCm39
Rn
Rat
Rattus norvegicus
GRCr8
Dr
Zebrafish
Danio rerio
GRCz11
Dm
Fruit fly
Drosophila melanogaster
BDGP6
Ce
Roundworm
Caenorhabditis elegans
WBcel235
Sc
Baker's yeast
Saccharomyces cerevisiae
R64-1-1
Eco
E. coli
Escherichia coli K-12
ASM584v2
At
Thale cress
Arabidopsis thaliana
TAIR10
Xt
Tropical clawed frog
Xenopus tropicalis
UCB_Xtro_10.0
Mammals
Bt
Cattle
Bos taurus
ARS-UCD2.0
Cj
Common marmoset
Callithrix jacchus
mCalJac1.pat.X
Cf
Dog
Canis lupus familiaris
ROS_Cfam_1.0
Ch
Goat
Capra hircus
ARS1
Cp
Guinea pig
Cavia porcellus
Cavpor3.0
Cs
African green monkey
Chlorocebus sabaeus
ChlSab1.1
Cg
Chinese hamster (CHO)
Cricetulus griseus
CriGri-PICRH-1.0
Eca
Horse
Equus caballus
EquCab3.0
Fc
Cat
Felis catus
Fca126_mat1.0
Hg
Naked mole-rat
Heterocephalus glaber
Naked_mole-rat_maternal
Mfa
Cynomolgus macaque
Macaca fascicularis
Macaca_fascicularis_6.0
Mmu
Rhesus macaque
Macaca mulatta
Mmul_10
Mau
Golden hamster
Mesocricetus auratus
MesAur1.0
Md
Grey short-tailed opossum
Monodelphis domestica
ASM229v1
Mpf
Ferret
Mustela putorius furo
MusPutFur1.0
Ml
Little brown bat
Myotis lucifugus
Myoluc2.0
Oc
Rabbit
Oryctolagus cuniculus
OryCun2.0
Oa
Sheep
Ovis aries
ARS-UI_Ramb_v3.0
Ptr
Chimpanzee
Pan troglodytes
Pan_tro_3.0
Rf
Greater horseshoe bat
Rhinolophus ferrumequinum
mRhiFer1_v1.p
Ss
Pig
Sus scrofa
Sscrofa11.1
Birds
Apl
Mallard duck
Anas platyrhynchos
ASM874695v1
Cli
Rock pigeon
Columba livia
bColLiv1.pat.W.v2
Cja
Japanese quail
Coturnix japonica
Coturnix_japonica_2.0
Gg
Chicken
Gallus gallus
GRCg7b
Mga
Turkey
Meleagris gallopavo
Turkey_5.1
Mun
Budgerigar
Melopsittacus undulatus
bMelUnd1.mat.Z
Tgu
Zebra finch
Taeniopygia guttata
bTaeGut1_v1.p
Fish
Cmi
Elephant shark
Callorhinchus milii
Callorhinchus_milii-6.1.3
Ga
Three-spined stickleback
Gasterosteus aculeatus
GAculeatus_UGA_version5
Lch
Coelacanth
Latimeria chalumnae
LatCha1
Loc
Spotted gar
Lepisosteus oculatus
LepOcu1
Nf
Turquoise killifish
Nothobranchius furzeri
Nfu_20140520
Om
Rainbow trout
Oncorhynchus mykiss
USDA_OmykA_1.1
On
Nile tilapia
Oreochromis niloticus
UMD_NMBU
Ol
Medaka
Oryzias latipes
ASM223467v1
Pma
Sea lamprey
Petromyzon marinus
Pmarinus_7.0
Ssa
Atlantic salmon
Salmo salar
Ssal_v3.1
Tru
Fugu
Takifugu rubripes
fTakRub1.2
Amphibians
Amx
Axolotl
Ambystoma mexicanum
UKY_AmexF1_1
Pwa
Iberian ribbed newt
Pleurodeles waltl
aPleWal1.hap1
Xl
African clawed frog
Xenopus laevis
Xenopus_laevis_v10.1
Reptiles
Ami
American alligator
Alligator mississippiensis
rAllMis1
Aca
Green anole
Anolis carolinensis
AnoCar2.0v2
Cpi
Painted turtle
Chrysemys picta bellii
Chrysemys_picta_bellii-3.0.3
Nna
Indian cobra
Naja naja
Nana_v5
Pvi
Central bearded dragon
Pogona vitticeps
PviZW2.1
Tsc
Red-eared slider
Trachemys scripta elegans
CAS_Tse_1.0
Invertebrates
Aa
Yellow fever mosquito
Aedes aegypti
AaegL5
Aal
Asian tiger mosquito
Aedes albopictus
GCA035046485v1
Ag
Malaria mosquito
Anopheles gambiae
AgamP4
As
Asian malaria mosquito
Anopheles stephensi
AsteI2
Am
Honey bee
Apis mellifera
Amel_HAv3.1
Ac
California sea hare
Aplysia californica
AplCal3.0
Bmo
Silkworm
Bombyx mori
ASM3026992v2
Bma
Filarial worm
Brugia malayi
Bmal-4.0
Cb
Nematode (briggsae)
Caenorhabditis briggsae
CB4
Ci
Sea vase
Ciona intestinalis
ASM1832782v2
Cq
Southern house mosquito
Culex quinquefasciatus
VPISU_Cqui_1.0
Dma
Water flea
Daphnia magna
ASM2063170v1.1
Dp
Common water flea
Daphnia pulex
ASM2113471v1
Dsi
Fruit fly (simulans)
Drosophila simulans
Prin_Dsim_3.1
Hyd
Hydra
Hydra vulgaris
HydraT2T_AEP
He
Water bear
Hypsibius exemplaris
nHd_3.1
Isc
Black-legged tick
Ixodes scapularis
ASM1692078v2
Nv
Starlet sea anemone
Nematostella vectensis
jaNemVect1.1
Rv
Water bear (Ramazzottius)
Ramazzottius varieornatus
Rvar_4.0
Sma
Blood fluke
Schistosoma mansoni
Smansoni_v7
Sme
Planarian
Schmidtea mediterranea
schMedS3h2
Spu
Purple sea urchin
Strongylocentrotus purpuratus
Spur_5.0
Tc
Red flour beetle
Tribolium castaneum
icTriCast1.1
Plants
Al
Lyrate rockcress
Arabidopsis lyrata
v.1.0
Bd
Purple false brome
Brachypodium distachyon
v3.0
Bn
Canola
Brassica napus
AST_PRJEB5043_v1
Bo
Cabbage
Brassica oleracea
BOL
Br
Field mustard
Brassica rapa
Brapa_1.0
Cr
Green alga
Chlamydomonas reinhardtii
v5.5
Gm
Soybean
Glycine max
Glycine_max_v2.1
Gh
Cotton
Gossypium hirsutum
TM-1 v2.1
Hv
Barley
Hordeum vulgare
MorexV3
Mp
Common liverwort
Marchantia polymorpha
MpTak1_v7.1
Mt
Barrel medic
Medicago truncatula
MtrunA17r5.0
Os
Rice
Oryza sativa
IRGSP-1.0
Pp
Spreading earthmoss
Physcomitrium patens
Phypa V3
Pt
Black cottonwood
Populus trichocarpa
Pop_tri_v4
Si
Foxtail millet
Setaria italica
v2.0
Sv
Green foxtail
Setaria viridis
v2.0
Sl
Tomato
Solanum lycopersicum
SL4.0
St
Potato
Solanum tuberosum
SolTub_3.0
Sb
Sorghum
Sorghum bicolor
NCBIv3
Ta
Bread wheat
Triticum aestivum
IWGSC
Vv
Grape
Vitis vinifera
ASM3070453v1
Zm
Maize
Zea mays
B73 NAM-5.0
Fungi
Afu
A. fumigatus
Aspergillus fumigatus Af293
GCA000002655v1
Ani
A. nidulans
Aspergillus nidulans
ASM1142v1
Bci
Grey mould
Botrytis cinerea
ASM83294v1
Cal
C. albicans
Candida albicans SC5314
Assembly 22
Cau
C. auris
Candidozyma auris
GCA002759435v2
Cn
C. neoformans
Cryptococcus neoformans H99
CNA3
Kph
Pichia pastoris
Komagataella phaffii
ASM2700v1
Mor
Rice blast fungus
Magnaporthe oryzae
GCA900474545v2
Nc
Red bread mould
Neurospora crassa
NC12
Sp
Fission yeast
Schizosaccharomyces pombe
ASM294v2
Protists
Cpa
Cryptosporidium
Cryptosporidium parvum
ASM16534v1
Dd
Slime mould
Dictyostelium discoideum
dicty_2.7
Ehi
Entamoeba
Entamoeba histolytica
JCVI-ESG2-1.0
Gi
Giardia
Giardia intestinalis
GCA000002435v2
Lm
Leishmania
Leishmania major Friedlin
ASM272v2
Pf
Malaria parasite
Plasmodium falciparum
GCA000002765v3
Pv
Malaria parasite (vivax)
Plasmodium vivax
GCA900093555v2
Tg
Toxoplasma
Toxoplasma gondii ME49
TGA4
Tv
Trichomonas
Trichomonas vaginalis
ASM282v3
Tb
Sleeping sickness parasite
Trypanosoma brucei
GCA000002445v1
Bacteria
Ab
A. baumannii
Acinetobacter baumannii ATCC 17978
ASM1542v1
Atu
Agrobacterium
Agrobacterium fabrum
ASM9202v1
Bs
B. subtilis
Bacillus subtilis 168
ASM904v1
Bb
Lyme disease bacterium
Borreliella burgdorferi
ASM868v2
Cje
Campylobacter
Campylobacter jejuni
ASM908v1
Ct
Chlamydia
Chlamydia trachomatis
ASM872v1
Cd
C. difficile
Clostridioides difficile 630
ASM920v2
Efm
E. faecium
Enterococcus faecium Aus0004
ASM25094v2
Hp
H. pylori
Helicobacter pylori 26695
ASM852v1
Kp
K. pneumoniae
Klebsiella pneumoniae HS11286
ASM24018v2
Lp
Legionella
Legionella pneumophila
ASM848v1
Lmo
Listeria
Listeria monocytogenes
ASM19603v1
Mtb
M. tuberculosis
Mycobacterium tuberculosis H37Rv
ASM19595v2
Ng
N. gonorrhoeae
Neisseria gonorrhoeae FA 1090
ASM684v1
Pa
P. aeruginosa
Pseudomonas aeruginosa PAO1
ASM676v1
Sty
Salmonella
Salmonella Typhimurium LT2
ASM694v2
Sau
S. aureus
Staphylococcus aureus NCTC 8325
ASM1342v1
Spn
S. pneumoniae
Streptococcus pneumoniae TIGR4
ASM688v1
Spy
Group A strep
Streptococcus pyogenes
ASM678v2
Sco
S. coelicolor
Streptomyces coelicolor A3(2)
ASM20383v1
Syn
Synechocystis
Synechocystis sp. PCC 6803
ASM972v1
Vc
Cholera bacterium
Vibrio cholerae
ASM674v1
Archaea
Hvo
Haloferax
Haloferax volcanii
ASM2568v1
Mj
Methanocaldococcus
Methanocaldococcus jannaschii
ASM9166v1
Pfu
Pyrococcus
Pyrococcus furiosus
ASM730v1
Sso
Sulfolobus
Saccharolobus solfataricus
ASM700v1
Viruses
Lam
Phage lambda
Escherichia phage lambda
ViralProj14204
HBV
Hepatitis B
Hepatitis B virus
ViralProj15428
HSV1
Herpes simplex 1
Human alphaherpesvirus 1
strain 17
HCMV
Cytomegalovirus
Human betaherpesvirus 5
Merlin
EBV
Epstein-Barr virus
Human gammaherpesvirus 4
ASM240226v1
HIV
HIV-1
Human immunodeficiency virus 1
HXB2
HPV
HPV-16
Human papillomavirus 16
ViralProj15505
RSV
RSV
Human respiratory syncytial virus
ASM281547v1
FluA
Influenza A
Influenza A virus
A/PR/8/1934 (H1N1)
MPXV
Mpox
Monkeypox virus
Zaire-96-I-16
Cov2
SARS-CoV-2
Severe acute respiratory syndrome coronavirus 2
ASM985889v3
Ebo
Ebola virus
Zaire ebolavirus
Mayinga 1976
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R package
